API for jokergoo/cola
A Framework for Consensus and Hierarchical Partition

Global functions
AAC Man page Source code
ConsensusPartition Man page
ConsensusPartition-class Man page
ConsensusPartitionList Man page
ConsensusPartitionList-class Man page
Ftest Source code
HierarchicalPartition Man page
HierarchicalPartition-class Man page
PAC Man page Source code
[.ConsensusPartitionList Man page
[.HierarchicalPartition Man page
[[.HierarchicalPartition Man page
add_transparency Source code
adjust_matrix Man page Source code
adjust_outlier Man page Source code
all_leaves Man page
all_leaves,HierarchicalPartition-method Man page
all_nodes Man page
all_nodes,HierarchicalPartition-method Man page
all_partition_methods Man page Source code
all_top_value_methods Man page Source code
calc_dend Source code
cola Man page Source code
cola_report Man page
cola_report,ConsensusPartition-method Man page
cola_report,ConsensusPartitionList-method Man page
cola_report,HierarchicalPartition-method Man page
cola_rh Man page
cola_rl Man page
collect_classes Man page
collect_classes,ConsensusPartition-method Man page
collect_classes,ConsensusPartitionList-method Man page
collect_classes,HierarchicalPartition-method Man page
collect_plots Man page
collect_plots,ConsensusPartition-method Man page
collect_plots,ConsensusPartitionList-method Man page
column_order_by_group Source code
compare_to_highest_subgroup Source code
compare_to_lowest_subgroup Source code
concordance Man page Source code
consensus_heatmap Man page
consensus_heatmap,ConsensusPartition-method Man page
consensus_partition Man page Source code Source code
cophcor Source code
correspond_between_rankings Man page Source code
correspond_between_two_rankings Man page Source code
dev.off2 Source code
dimension_reduction Man page
dimension_reduction,ConsensusPartition-method Man page
dimension_reduction,HierarchicalPartition-method Man page
dimension_reduction,matrix-method Man page
entropy Source code
farthest_subgroup Source code
get_anno Man page
get_anno,ConsensusPartition-method Man page
get_anno,ConsensusPartitionList-method Man page
get_anno,HierarchicalPartition-method Man page
get_anno_col Man page
get_anno_col,ConsensusPartition-method Man page
get_anno_col,ConsensusPartitionList-method Man page
get_anno_col,HierarchicalPartition-method Man page
get_children Source code
get_classes Man page
get_classes,ConsensusPartition-method Man page
get_classes,ConsensusPartitionList-method Man page
get_classes,HierarchicalPartition-method Man page
get_consensus Man page
get_consensus,ConsensusPartition-method Man page
get_consensus_from_multiple_methods Source code
get_matrix Man page
get_matrix,ConsensusPartition-method Man page
get_matrix,ConsensusPartitionList-method Man page
get_matrix,HierarchicalPartition-method Man page
get_membership Man page
get_membership,ConsensusPartition-method Man page
get_membership,ConsensusPartitionList-method Man page
get_param Man page
get_param,ConsensusPartition-method Man page
get_partition_method Source code
get_signature_index Source code
get_signatures Man page
get_signatures,ConsensusPartition-method Man page
get_signatures,HierarchicalPartition-method Man page
get_stat Man page
get_stat,ConsensusPartition-method Man page
get_stat,ConsensusPartitionList-method Man page
get_top_value_method Source code
guess_best_k Man page
guess_best_k,ConsensusPartition-method Man page
guess_best_k,ConsensusPartitionList-method Man page
hierarchical_partition Man page Source code
knitr_add_tab_item Man page Source code
knitr_insert_tabs Man page Source code
make_report Source code
max_depth Man page
max_depth,HierarchicalPartition-method Man page
mean_dist_decrease Source code
membership_heatmap Man page
membership_heatmap,ConsensusPartition-method Man page
pamr Source code
plot_ecdf Man page
plot_ecdf,ConsensusPartition-method Man page
register_partition_method Man page Source code
register_top_value_method Man page Source code
relabel_class Source code
remove_partition_method Man page Source code
remove_top_value_method Man page Source code
run_all_consensus_partition_methods Man page Source code
samr Source code
select_partition_number Man page
select_partition_number,ConsensusPartition-method Man page
show Man page
show,ConsensusPartition-method Man page
show,ConsensusPartitionList-method Man page
show,HierarchicalPartition-method Man page
submit_to_david Man page Source code
test_between_factors Man page Source code
test_row_diff_fun Source code
test_to_known_factors Man page
test_to_known_factors,ConsensusPartition-method Man page
test_to_known_factors,ConsensusPartitionList-method Man page
test_to_known_factors,HierarchicalPartition-method Man page
tightest_subgroup Source code
top_rows_heatmap Man page
top_rows_heatmap,ConsensusPartitionList-method Man page
top_rows_heatmap,matrix-method Man page
top_rows_overlap Man page
top_rows_overlap,ConsensusPartitionList-method Man page
top_rows_overlap,list-method Man page
top_rows_overlap,matrix-method Man page
tot_withinss Source code
try_and_trace Source code
ttest Source code
venn_euler Man page Source code
jokergoo/cola documentation built on June 13, 2018, 2:13 p.m.