top_rows_overlap-ConsensusPartitionList-method: Overlap of top rows from different top-value methods

In jokergoo/cola: A Framework for Consensus Partitioning

Overlap of top rows from different top-value methods

Description

Overlap of top rows from different top-value methods

Usage

## S4 method for signature 'ConsensusPartitionList'
top_rows_overlap(object, top_n = min(object@list[[1]]@top_n),
    method = c("euler", "upset", "venn", "correspondance"), fill = NULL, ...)

Arguments

object	A ConsensusPartitionList-class object.
top_n	Number of top rows.
method	euler: plot Euler diagram by euler; upset: draw the Upset plot by UpSet; venn: plot Venn diagram by venn; correspondance: use correspond_between_rankings.
fill	Filled color for the Euler diagram. The value should be a color vector. Transparency of 0.5 are added internally.
...	Additional arguments passed to plot.euler, UpSet or correspond_between_rankings.

Value

No value is returned.

Author(s)

Zuguang Gu <[e-mail]>

See Also

top_elements_overlap

Examples

data(golub_cola)
top_rows_overlap(golub_cola, method = "euler")
top_rows_overlap(golub_cola, method = "upset")
top_rows_overlap(golub_cola, method = "venn")
top_rows_overlap(golub_cola, method = "correspondance")

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.