get_signatures-HierarchicalPartition-method: Get signatures rows

Description Usage Arguments Details Value Author(s) Examples

Description

Get signatures rows

Usage

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## S4 method for signature 'HierarchicalPartition'
get_signatures(object, depth = max_depth(object),
    scale_rows = object[1]@scale_rows,
    anno = get_anno(object[1]),
    anno_col = get_anno_col(object[1]),
    show_column_names = TRUE,
    verbose = TRUE, plot = TRUE, plot_type = c("venneuler", "heatmap"),
    silhouette_cutoff = -Inf,
    ...)

Arguments

object

a HierarchicalPartition-class object.

depth

minimal depth of the hierarchy

scale_rows

whether scale rows

anno

annotation

anno_col

annotation color

show_column_names

whether show column names

verbose

whether print messages

plot

whether make the heatmap

plot_type

type of the plot

silhouette_cutoff

cutoff for silhouette scores.

...

other arguments

Details

The function called get_signatures,ConsensusPartition-method to find signatures at each level of the partition hierarchy.

Value

A list of signature names (row names of the original data matrix)

Author(s)

Zuguang Gu <[email protected]>

Examples

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## Not run: 
data(cola_rh)
get_signatures(cola_rh)

## End(Not run)

jokergoo/cola documentation built on Nov. 19, 2018, 9:18 p.m.