get_classes-ConsensusPartitionList-method: Get subgroup labels
In jokergoo/cola: A Framework for Consensus Partitioning
get_classes-ConsensusPartitionList-method R Documentation
Get subgroup labels
Description
Get subgroup labels
Usage
## S4 method for signature 'ConsensusPartitionList'
get_classes(object, k)
Arguments
object
A ConsensusPartitionList-class object.
k
Number of subgroups.
Details
The subgroup labels are inferred by merging partitions from all methods
by weighting the mean silhouette scores in each method.
Value
A data frame with subgroup labels and other columns which are entropy of the percent membership matrix
and the silhouette scores which measure the stability of a sample to stay in its group.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
data(golub_cola)
get_classes(golub_cola, k = 2)
jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.
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| get_classes-ConsensusPartitionList-method | R Documentation |
Get subgroup labels
Description
Get subgroup labels
Usage
## S4 method for signature 'ConsensusPartitionList'
get_classes(object, k)
Arguments
object |
A |
k |
Number of subgroups. |
Details
The subgroup labels are inferred by merging partitions from all methods by weighting the mean silhouette scores in each method.
Value
A data frame with subgroup labels and other columns which are entropy of the percent membership matrix and the silhouette scores which measure the stability of a sample to stay in its group.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
data(golub_cola)
get_classes(golub_cola, k = 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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