suggest_best_k-ConsensusPartitionList-method: Suggest the best number of subgroups

In jokergoo/cola: A Framework for Consensus Partitioning

Suggest the best number of subgroups

Description

Suggest the best number of subgroups

Usage

## S4 method for signature 'ConsensusPartitionList'
suggest_best_k(object, jaccard_index_cutoff = select_jaccard_cutoff(ncol(object)))

Arguments

object	A ConsensusPartitionList-class object.
jaccard_index_cutoff	The cutoff for Jaccard index for comparing to previous k.

Details

It basically gives the best k for each combination of top-value method and partitioning method by calling suggest_best_k,ConsensusPartition-method.

1-PAC score higher than 0.95 is treated as very stable partition (marked by **) and higher than 0.9 is treated as stable partition (marked by *).

Value

A data frame with the best k and other statistics for each combination of methods.

Author(s)

Zuguang Gu <[e-mail]>

Examples

data(golub_cola)
suggest_best_k(golub_cola)

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.