param_space: Parameter space for the analysis of the DAISIE mainland...

In joshwlambert/DAISIEmainland: Simulates Data for Phylogenetic Data on Islands for DAISIE with the Addition of Mainland Dynamics

Parameter space for the analysis of the DAISIE mainland extinction model.

Description

A dataset containing the parameter sets (rows) for the simulation of the DAISIE mainland extinction model for the analysis of the error inferred by DAISIE's maximum likelihood model.

Usage

data("param_space", package = "DAISIEmainland")

Format

A data frame with 46 rows and 12 variables:

total_time

Duration of simulation (million years)

m

Number of species on the mainland

island_clado

Rate of cladogenesis on the island

island_ex

Rate of extinction on the island

island_k

Carrying capacity for each island clade

island_immig

Rate of immigration on the island

island_ana

Rate of anagenesis on the island

mainland_ex

Rate of extinction on the mainland

mainland_sample_prob

Probability of a mainland species being sampled at the end of the simulation if it is extant

mainland_sample_type

Type of incomplete sampling on the mainland

replicates

Number or island replicates

seed

Sets the random number generator seed

joshwlambert/DAISIEmainland documentation built on July 14, 2024, 5:40 p.m.