API for joshwlambert/DAISIEmainland
Simulates Data for Phylogenetic Data on Islands for DAISIE with the Addition of Mainland Dynamics
| Global functions | |
|---|---|
| DAISIEmainland | Man page |
| DAISIEmainland-package | Man page |
| add_metadata_to_daisie_data | Man page Source code |
| all_endemic_clades | Man page Source code |
| all_endemic_singletons | Man page Source code |
| ana_event | Man page Source code |
| any_recols | Man page Source code |
| branch_code_to_y | Man page Source code |
| calc_ctt | Man page Source code |
| calc_empirical_col | Man page Source code |
| calc_endemic_percent | Man page Source code |
| calc_error | Man page Source code |
| calc_island_endemics | Man page Source code |
| calc_max_age_percent | Man page Source code |
| calc_num_col | Man page Source code |
| calc_num_spec | Man page Source code |
| calc_outliers | Man page Source code |
| calc_param_diffs | Man page Source code |
| calc_param_ratios | Man page Source code |
| calc_quantiles | Man page Source code |
| calc_rates | Man page Source code |
| calc_sim_metrics | Man page Source code |
| check_analysis_result | Man page Source code |
| check_branch_code | Man page Source code |
| check_branching_times | Man page Source code |
| check_daisie_data | Man page Source code |
| check_daisie_mainland_data | Man page Source code |
| check_event_times | Man page Source code |
| check_island_tbl | Man page Source code |
| check_mainland_clade | Man page Source code |
| check_missing_species | Man page Source code |
| check_multi_daisie_data | Man page Source code |
| check_multi_mainland_clade | Man page Source code |
| check_species_type | Man page Source code |
| check_stac | Man page Source code |
| choose_scientific | Man page Source code |
| clado_event | Man page Source code |
| colonist_species_type_to_str | Man page Source code |
| common_ancestor_time | Man page Source code |
| count_extant_mainland_species | Man page Source code |
| create_daisie_data | Man page Source code |
| create_empirical_island | Man page Source code |
| create_false_clade_brts | Man page Source code |
| create_ideal_island | Man page Source code |
| create_ihs_breaks | Man page Source code |
| create_labels | Man page Source code |
| create_non_empty_island | Man page Source code |
| create_test_island_tbl | Man page Source code |
| create_test_mainland_clade | Man page Source code |
| daisie_data_colonist_info_to_braching_times_table | Man page Source code |
| daisie_data_colonist_info_to_colonisation_times_table | Man page Source code |
| daisie_data_colonist_info_to_general_table | Man page Source code |
| daisie_data_to_tables | Man page Source code |
| daisie_header_to_table | Man page Source code |
| default_params_doc | Man page Source code |
| event_to_str | Man page Source code |
| ext_event | Man page Source code |
| group_multi_daisie_data | Man page Source code |
| immig_event | Man page Source code |
| is_daisie_data | Man page Source code |
| param_space | Man page |
| plot_ctt_boxplot | Man page Source code |
| plot_ctt_heatmap | Man page Source code |
| plot_ctt_scatter | Man page Source code |
| plot_daisie_data | Man page Source code |
| plot_daisie_mainland_data | Man page Source code |
| plot_endemics | Man page Source code |
| plot_inf_k | Man page Source code |
| plot_k_estimates | Man page Source code |
| plot_log_param_ratios | Man page Source code |
| plot_mainland | Man page Source code |
| plot_mainland_clade | Man page Source code |
| plot_max_age | Man page Source code |
| plot_param_diffs | Man page Source code |
| plot_sim_metrics | Man page Source code |
| read_analysis_results | Man page Source code |
| sample_event | Man page Source code |
| sample_mainland | Man page Source code |
| scientific | Man page Source code |
| sim_island | Man page Source code |
| sim_island_with_mainland | Man page Source code |
| sim_mainland | Man page Source code |
| species_type_to_str | Man page Source code |
| stac_to_english_str | Man page Source code |
| stac_to_str | Man page Source code |
| str_to_event | Man page Source code |
| str_to_stac | Man page Source code |
| update_island_endemics | Man page Source code |
| update_state | Man page Source code |
