sample_mainland: Samples the mainland clade with the mainland sampling...

In joshwlambert/DAISIEmainland: Simulates Data for Phylogenetic Data on Islands for DAISIE with the Addition of Mainland Dynamics

Samples the mainland clade with the mainland sampling probability

Description

Samples the mainland clade with the mainland sampling probability

Usage

sample_mainland(
  total_time,
  mainland_clade,
  mainland_sample_prob,
  mainland_sample_type,
  island_tbl
)

Arguments

total_time	Numeric defining the length of the simulation in time units.
mainland_clade	Data frame with state of mainland, see create_test_mainland_clade()
mainland_sample_prob	Numeric between zero and one determining the probability of an extant mainland species being sampled.
mainland_sample_type	String either "unsampled" for unsampled known species on the mainland, "undiscovered" for undiscovered species on the mainland, or "complete" if the mainland sampling probability is one.
island_tbl	Data frame with current state of simulation containing number of species, see create_test_island_tbl()

Value

A data frame

Author(s)

Joshua W. Lambert

joshwlambert/DAISIEmainland documentation built on July 14, 2024, 5:40 p.m.