plot_param_diffs: Plots a grid of density plots of parameter estimates on the...

In joshwlambert/DAISIEmainland: Simulates Data for Phylogenetic Data on Islands for DAISIE with the Addition of Mainland Dynamics

Plots a grid of density plots of parameter estimates on the diagonal, scatter plots of parameter estimates under the diagonal and scatter plots of differences between ideal and empirical parameter estimates above the diagonal.

Description

Plots a grid of density plots of parameter estimates on the diagonal, scatter plots of parameter estimates under the diagonal and scatter plots of differences between ideal and empirical parameter estimates above the diagonal.

Usage

plot_param_diffs(
  param_set,
  data_folder_path,
  output_file_path,
  parameter,
  signif,
  scientific = FALSE,
  transform = NULL
)

Arguments

param_set	Numeric for the index of the parameter set from the parameter space
data_folder_path	String specifying the directory the data is read from
output_file_path	String specifying the directory the file is saved in, if NULL the file is returned to console and not saved
parameter	String specifying which parameter is plotted. "mainland_ex" plots mainland extinction as the variable, "mainland_sample_prob" plots mainland sampling probability as the variable and "both" plots all the data
signif	A numeric specifying how many significant figures the axes labels have when plotting
scientific	A boolean determining whether the axis labels will be converted to scientific notation
transform	Either NULL or "ihs" to specify no transformation of the data or an inverse hyperbolic sine (ihs) transformation

Value

Void (saves plot)

joshwlambert/DAISIEmainland documentation built on July 14, 2024, 5:40 p.m.