ResExpressionSet-class: Class '"ResExpressionSet"'

In jotsetung/generalgcrma: GCRMA background adjustment for Affymetrix Tiling, Exon and Gene ST microarrays.

Description

A class extending the ExpressionSet class from the Biobase package with an additional slot residuals containing aggregated probe residual information from the RMA model fitting of the individual probe sets.

Objects from the Class

Objects can be created by calls of the form new("ResExpressionSet", assayData, phenoData, featureData, exprs, ...).

Objects of the type ExpressionSet can be casted to ResExpressionSet using the newResExpressionSet function.

Slots

residuals:

Object of class "matrix"

experimentData:

Object of class "MIAME": see documentation for ExpressionSet objects.

assayData:

Object of class "AssayData": see documentation for ExpressionSet objects.

phenoData:

Object of class "AnnotatedDataFrame": see documentation for ExpressionSet objects.

featureData:

Object of class "AnnotatedDataFrame": see documentation for ExpressionSet objects.

annotation:

Object of class "character": see documentation for ExpressionSet objects.

protocolData:

Object of class "AnnotatedDataFrame": see documentation for ExpressionSet objects.

.__classVersion__:

Object of class "Versions": see documentation for ExpressionSet objects.

Extends

Class "ExpressionSet", directly.

Methods

residuals

signature(object = "ResExpressionSet"): ...

Author(s)

Johannes Rainer

References

Rainer J, Lelong J, Bindreither D, Mantinger C, Ploner C, Geley S, Kofler R. (2012) Research resource: transcriptional response to glucocorticoids in childhood acute lymphoblastic leukemia. Mol Endocrinol. 2012 Jan;26(1):178-93.

http://bioinfo.i-med.ac.at

jotsetung/generalgcrma documentation built on May 19, 2019, 9:41 p.m.