Description Usage Format Details References Examples
Pre-calculated affinity spline coefficients a GCRMA pre-processing of Affymetrix Exon microarrays (or other DNA-DNA binding arrays with terminal labeling).
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The format is: Named num [1:15] -0.031403 -0.01374 0.04836 -0.026573 -0.000623 ... - attr(*, "names")= chr [1:15] "A" "A" "A" "A" ...
The spline coefficients were calculated by the base.profiles
function from package gcrma
on a data set consisting of 4 human Affymetrix Exon microarrays to which RNA from drosophila was hybridised. The probes on the human array should thus in principle mainly measure NSB.
Rainer J, Lelong J, Bindreither D, Mantinger C, Ploner C, Geley S, Kofler R. (2012) Research resource: transcriptional response to glucocorticoids in childhood acute lymphoblastic leukemia. Mol Endocrinol. 2012 Jan;26(1):178-93.
http://bioinfo.i-med.ac.at
1 2 3 | data(affinity.spline.coefs.exon)
## maybe str(affinity.spline.coefs.exon) ; plot(affinity.spline.coefs.exon) ...
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