Description Usage Arguments Details Value Author(s) References
Plots the average intensity of all probes with a specific nucleotide per position.
1 2 | nucleotidePositionPlot( x, keep.pattern, exclude.pattern ,... )
plotNucleoPos(x, sequences, log_trans = TRUE, center=FALSE)
|
x |
The AffyBatch object, a matrix or a numeric vector with probe intensities. |
keep.pattern |
pattern to restrict the plot to probes of specific probe sets. If not defined all pm probes will be used. |
exclude.pattern |
pattern to be used to exclude probes for specific probe sets. If not defined all pm probes will be used. |
sequences |
The probe sequences with the same order and length as x if x is not an AffyBath. |
log_trans |
log2 transform probe intensity values (Default is TRUE) |
center |
mean probe intensity centered on overall intensity average (mean(x))(Default is FALSE). |
... |
Additional arguments passed to the |
Creates a plot of the averaged intensities of probes with a specific nucleotide at each position along the probe sequence.
Creates a plot
Julien Lelong, Johannes Rainer
Rainer J, Lelong J, Bindreither D, Mantinger C, Ploner C, Geley S, Kofler R. (2012) Research resource: transcriptional response to glucocorticoids in childhood acute lymphoblastic leukemia. Mol Endocrinol. 2012 Jan;26(1):178-93.
http://bioinfo.i-med.ac.at
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