API for jrboyd/seqtsne
Application of t-sne to NGS Genomic Signal Profiles
| Global functions | |
|---|---|
| .prepare_plot_inputs | Source code |
| ChIPtSNE | Man page Source code |
| ChIPtSNE.runTSNE | Man page |
| ClusteredSignal_TSNE | Man page Source code |
| ClusteredSignal_TSNE-class | Man page |
| ClusteredSignal_TSNE.fromConfig | Man page Source code |
| ClusteredSignal_TSNE.from_ClusteredSignal | Source code |
| ClusteredSignal_TSNE.null | Man page Source code |
| ConfigFeatures | Man page |
| ConfigFeatures.GRanges | Man page |
| ConfigFeatures.files | Man page |
| ConfigFeatures.parse | Man page |
| ConfigFeatures.save_config | Man page |
| ConfigSignal | Man page |
| ConfigSignal.files | Man page |
| aggregate_signals | Man page Source code |
| animate_summary_profiles | Source code |
| annotate_rects | Source code |
| bam_pileup_dt | Man page |
| bin_values | Man page Source code |
| bin_values_centers | Man page Source code |
| calc_delta | Man page Source code |
| combine_most_similar | Man page |
| ctClusterPoints | Man page Source code |
| ctPlotBinAggregates | Man page Source code |
| ctPlotPoints | Man page Source code |
| ctPlotPointsAnnotation | Man page Source code |
| ctPlotSummaryProfiles | Man page Source code |
| fetch_bam_dt | Man page |
| fetch_bam_stranded_dt | Man page |
| fetch_bw_dt | Man page |
| geom_image.rect | Man page Source code |
| getAR2 | Source code |
| hESC_data | Man page |
| imageGrob.rect | Source code |
| labels | Source code |
| movingAverage | Source code |
| nn_clust | Man page |
| plot_binned_aggregates | Man page |
| plot_flat | Man page Source code |
| plot_outline | Man page Source code |
| plot_path | Man page Source code |
| plot_profiles_selected | Man page Source code |
| plot_recentered_velocity | Man page Source code |
| plot_regional_velocity | Man page Source code |
| plot_summary_glyph | Man page |
| plot_summary_raster | Man page |
| plot_summary_raster_byCell | Man page |
| plot_velocity_arrows | Man page |
| plot_velocity_bins | Man page Source code |
| plot_velocity_centered | Man page Source code |
| prep_images | Man page |
| prep_profile_dt | Man page |
| prep_query_gr | Man page |
| prep_summary | Man page |
| prep_velocity | Man page |
| profile_dt | Man page |
| query_gr | Man page |
| rescale_capped | Man page Source code |
| runExample | Man page Source code |
| run_tsne | Man page |
| sampleCap | Man page |
| set_image_rects | Man page |
| stsFetchTsneInput | Man page Source code |
| stsPlotClusterProfiles | Man page |
| stsPlotSummaryProfiles | Man page |
| tsne_dt | Man page |
