hESC_data: Data from 3 hESC cell lines for two histone modifications,...

In jrboyd/seqtsne: Application of t-sne to NGS Genomic Signal Profiles

Data from 3 hESC cell lines for two histone modifications, H3K4me3 and H3K27me3.

Description

This is ENCODE data that has been aligned to hg38 by STAR. Bams and fold-enrichment bigwigs are included for 30 randomly selected regions from a published list of bivalent (H3K4me3 and H3K27me3, an active and repressive mark co-occuring) sites in hESC cell lines.

Details

Contains:

• query_gr

Data from GEO series GSE17312

ESH1	input	GSM433179	R1
ESH1	H3K27me3	GSM537683	R1
ESH1	H3K4me3	GSM537681	R1
ESH1	input	GSM605335	R2
ESH1	H3K27me3	GSM605308	R2
ESH1	H3K4me3	GSM605315	R2
ESH1	input	GSM605339	R3
ESH1	H3K27me3	GSM466734	R3
ESH1	H3K4me3	GSM469971	R3
HUES64	input	GSM772754	R1
HUES64	H3K27me3	GSM772750	R1
HUES64	H3K4me3	GSM772752	R1
HUES64	input	GSM772807	R2
HUES64	H3K27me3	GSM669974	R2
HUES64	H3K4me3	GSM669967	R2
HUES48	input	GSM772755	R1
HUES48	H3K27me3	GSM669942	R1
HUES48	H3K4me3	GSM669936	R1
HUES48	input	GSM772794	R2
HUES48	H3K27me3	GSM772766	R2
HUES48	H3K4me3	GSM772797	R2

Source

GSE17312 ENCODE Data

An annotated list of bivalent chromatin regions in human ES cells: a new tool for cancer epigenetic research

jrboyd/seqtsne documentation built on Nov. 5, 2022, 6:37 a.m.