ctClusterPoints: ctClusterPoints
In jrboyd/seqtsne: Application of t-sne to NGS Genomic Signal Profiles
ctClusterPoints R Documentation
ctClusterPoints
Description
ctClusterPoints
Usage
ctClusterPoints(sts, feature_name = NULL, signal_name = NULL, n_clust = 6)
Arguments
sts
A ChIPtSNE object with ssvQC.prepSignal already called.
n_clust
number of nearest neighbor clusters to calculate. Reached to calling too many clusters and iteratively combining most similar clusters.
Value
A data.table containing id and cluster_id information. Suitable for ctPlotPointsAnnotation.
Examples
data(ex_sts)
clust_dt =ctClusterPoints(sts, n_clust = 3)
ctPlotPointsAnnotation(sts, meta_data = clust_dt, anno_var = "cluster_id")
jrboyd/seqtsne documentation built on Nov. 5, 2022, 6:37 a.m.
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| ctClusterPoints | R Documentation |
ctClusterPoints
Description
ctClusterPoints
Usage
ctClusterPoints(sts, feature_name = NULL, signal_name = NULL, n_clust = 6)
Arguments
sts |
A ChIPtSNE object with ssvQC.prepSignal already called. |
n_clust |
number of nearest neighbor clusters to calculate. Reached to calling too many clusters and iteratively combining most similar clusters. |
Value
A data.table containing id and cluster_id information. Suitable for ctPlotPointsAnnotation.
Examples
data(ex_sts) clust_dt =ctClusterPoints(sts, n_clust = 3) ctPlotPointsAnnotation(sts, meta_data = clust_dt, anno_var = "cluster_id")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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