plot_regional_velocity: plot_regional_velocity

In jrboyd/seqtsne: Application of t-sne to NGS Genomic Signal Profiles

plot_regional_velocity

Description

plot_regional_velocity

Usage

plot_regional_velocity(
  tsne_dt,
  tall_var_a,
  tall_var_b,
  x_points,
  y_points = x_points,
  points_as_background = FALSE,
  p = NULL,
  min_N = 0,
  id_to_plot = NULL,
  strategy = c("by_direction", "by_destination")[2],
  arrow_FUN = NULL,
  angle_as_color = FALSE
)

Arguments

tsne_dt	tidy data.table of tsne results. variables names must include: tx, ty, id, and tall_var
tall_var_a	an item in tsne_dt$tall_var. the origin for calculating angle/distance.
tall_var_b	an item in tsne_dt$tall_var. the destination for calculating angle/distance.
x_points	number of equally spaced bins in the x-dimension. Required.
y_points	number of equally spaced bins in the y-dimension. Default is x_points.
points_as_background	if TRUE, show points in background.
p	an existing ggplot to overlay images onto. Default of NULL starts a new plot.
min_N	regional bins with fewer than min_N counts will not be shown.
id_to_plot	character. ids in tsne_dt$id. Default of NULL causes all ids to be used.
strategy	character. must be one of "by_direction" or "by_destination"
arrow_FUN	result of grid::arrow(). Default of NULL does not draw arrowheads.
angle_as_color	if TRUE, a rainbow like scale is applied to angle.

Value

ggplot where regionally binned velocities are summarized.

Examples

data("tsne_dt")
plot_regional_velocity(tsne_dt, unique(tsne_dt$tall_var)[1],
    unique(tsne_dt$tall_var)[2], 4, min_N = 4, arrow_FUN = arrow())

jrboyd/seqtsne documentation built on Nov. 5, 2022, 6:37 a.m.