alignFasta: calls STAR on fasta
In jrboyd/ssvRecipes: Recipes using seqsetvis
View source: R/functions_multimapping.R
alignFasta R Documentation
calls STAR on fasta
Description
calls STAR on fasta
Usage
alignFasta(
fasta_file,
prefix = sub("fasta", "", fasta_file),
cleanup = c("Log.out", "Log.progress.out", "SJ.out.tab"),
star_path = "/slipstream/galaxy/production/galaxy-dist/tools/star/STAR",
index_path = "/slipstream/galaxy/data/hg38/star_index"
)
Arguments
fasta_file
fasta or fastq file to align
prefix
prefix for STAR output
cleanup
suffixes of files to remove. by default only sam is kept.
star_path
path to STAR executable
index_path
path to genome indexes for STAR
jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/functions_multimapping.R
| alignFasta | R Documentation |
calls STAR on fasta
Description
calls STAR on fasta
Usage
alignFasta(
fasta_file,
prefix = sub("fasta", "", fasta_file),
cleanup = c("Log.out", "Log.progress.out", "SJ.out.tab"),
star_path = "/slipstream/galaxy/production/galaxy-dist/tools/star/STAR",
index_path = "/slipstream/galaxy/data/hg38/star_index"
)
Arguments
fasta_file |
fasta or fastq file to align |
prefix |
prefix for STAR output |
cleanup |
suffixes of files to remove. by default only sam is kept. |
star_path |
path to STAR executable |
index_path |
path to genome indexes for STAR |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.