my_clusterProfiler_MSigDB: my_clusterProfiler_MSigDB

In jrboyd/ssvRecipes: Recipes using seqsetvis

my_clusterProfiler_MSigDB

Description

my_clusterProfiler_MSigDB

Usage

my_clusterProfiler_MSigDB(
  gene_lists,
  bg_genes = NULL,
  force_overwrite = FALSE,
  bfc = BiocFileCache::BiocFileCache(),
  organism = c("hsa", "mmu")[1],
  pvalueCutoff = 0.05,
  qvalueCutoff = 0.1,
  msigdb_species = c("Homo sapiens", "Mus musculus")[1],
  msigdb_category = "C8",
  msigdb_subcategory = NULL,
  msigdb_TERM2GENE = NULL
)

Arguments

gene_lists
bg_genes
force_overwrite
bfc
organism
pvalueCutoff
qvalueCutoff
msigdb_species
msigdb_category

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.