my_clusterProfiler_KEGG: my_clusterProfiler_KEGG
In jrboyd/ssvRecipes: Recipes using seqsetvis

my_clusterProfiler_KEGG

R Documentation

my_clusterProfiler_KEGG

Description

my_clusterProfiler_KEGG

Usage

my_clusterProfiler_KEGG(
  gene_lists,
  bg_genes = NULL,
  gene_lists.as_is = FALSE,
  bg_genes.as_is = FALSE,
  OrgDb = org.Hs.eg.db::org.Hs.eg.db,
  force_overwrite = FALSE,
  bfc = BiocFileCache::BiocFileCache(),
  organism = c("hsa", "mmu")[1],
  pvalueCutoff = 0.05,
  qvalueCutoff = 0.1
)

Arguments

`gene_lists`	KEGG requires UNIPROT, gene_lists is expected to be SYMBOL. If already UNIPROT set gene_lists.as_is = TRUE.
`bg_genes`	KEGG requires UNIPROT, bg_genes is expected to be SYMBOL. If already UNIPROT set bg_genes.as_is = TRUE.
`force_overwrite`