API for js2264/VplotR
Set of tools to make V-plots and compute footprint profiles
| Global functions | |
|---|---|
| ABF1_sacCer3 | Man page |
| ATAC_ce11_Serizay2020 | Man page |
| CTCF_hg38 | Man page |
| MNase_sacCer3_Henikoff2011 | Man page |
| MNase_sacCer3_Henikoff2011_subset | Man page |
| REB1_sacCer3 | Man page |
| alignToTSS | Man page Source code |
| bam_test | Man page |
| ce11_all_REs | Man page |
| ce11_proms | Man page |
| computeNucleosomeEnrichmentOverBackground | Man page Source code |
| computeVmat | Man page Source code |
| deconvolveBidirectionalPromoters | Man page Source code |
| getCuts | Man page Source code |
| getFragmentsDistribution | Man page Source code |
| importPEBamFiles | Man page Source code |
| normalizeVmat | Man page Source code |
| nucleosomeEnrichment | Man page Source code |
| nucleosomeEnrichment.GRanges | Man page Source code |
| nucleosomeEnrichment.Vmat | Man page Source code |
| plotFootprint | Man page Source code |
| plotProfile | Man page Source code |
| plotVmat | Man page Source code |
| plotVmat.GRanges | Man page Source code |
| plotVmat.Vmat | Man page Source code |
| plotVmat.VmatList | Man page Source code |
| plotVmat.default | Man page Source code |
| plotVmat.list | Man page Source code |
| sampleGRanges | Man page Source code |
| sampleGRanges.GRanges | Man page Source code |
| shiftATACGranges | Man page Source code |
| shuffleVmat | Man page Source code |
| theme_ggplot2 | Man page Source code |
