VplotR: Set of tools to make V-plots and compute footprint profiles

shiftATACGranges

R Documentation

A function to shift GRanges fragments by 5/-4. This is useful when dealing with fragments coming from ATAC-seq.

A function to shift GRanges fragments by 5/-4. This is useful when dealing with fragments coming from ATAC-seq.

shiftATACGranges(g, pos_shift = 4, neg_shift = 5)

`g`	GRanges of ATAC-seq fragments
`pos_shift`	Integer. How many bases should fragments on direct strand be shifted by?
`neg_shift`	Integer. How many bases should fragments on negative strand be shifted by?

A GRanges object containing fragments from the input .bam file.

data(bam_test)
shiftATACGranges(bam_test)

js2264/VplotR documentation built on Jan. 4, 2024, 7:49 p.m.

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