deconvolveBidirectionalPromoters: A function to duplicate bi-directional GRanges
In js2264/VplotR: Set of tools to make V-plots and compute footprint profiles
deconvolveBidirectionalPromoters R Documentation
A function to duplicate bi-directional GRanges
Description
This function splits bi-directional ranges into + and -
stranded ranges. It duplicates the ranges which are '*'.
Usage
deconvolveBidirectionalPromoters(granges)
Arguments
granges
A stranded GRanges object
Value
GRanges with only '+' and '-' strands. GRanges with '*' strand
have been duplicated and split into forward and reverse strands.
Examples
data(ce11_all_REs)
library(GenomicRanges)
proms <- ce11_all_REs[grepl('prom', ce11_all_REs$regulatory_class)]
proms
table(strand(proms))
proms <- deconvolveBidirectionalPromoters(proms)
proms
table(strand(proms))
js2264/VplotR documentation built on Jan. 4, 2024, 7:49 p.m.
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| deconvolveBidirectionalPromoters | R Documentation |
A function to duplicate bi-directional GRanges
Description
This function splits bi-directional ranges into + and - stranded ranges. It duplicates the ranges which are '*'.
Usage
deconvolveBidirectionalPromoters(granges)
Arguments
granges |
A stranded GRanges object |
Value
GRanges with only '+' and '-' strands. GRanges with '*' strand have been duplicated and split into forward and reverse strands.
Examples
data(ce11_all_REs)
library(GenomicRanges)
proms <- ce11_all_REs[grepl('prom', ce11_all_REs$regulatory_class)]
proms
table(strand(proms))
proms <- deconvolveBidirectionalPromoters(proms)
proms
table(strand(proms))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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