nucleosomeEnrichment.GRanges: A function to compute nucleosome enrichment over a set of...

In js2264/VplotR: Set of tools to make V-plots and compute footprint profiles

A function to compute nucleosome enrichment over a set of GRanges

Description

A function to compute nucleosome enrichment over a set of GRanges

Usage

## S3 method for class 'GRanges'
nucleosomeEnrichment(x, granges, plus1_nuc_only = FALSE, verbose = TRUE, ...)

Arguments

x	GRanges, paired-end fragments
granges	GRanges, loci to map the fragments onto
plus1_nuc_only	Boolean, should compute nucleosome enrichment only for +1 nucleosome?
verbose	Boolean
...	additional parameters

Value

list

Examples

data(bam_test)
data(ce11_proms)
n <- nucleosomeEnrichment(bam_test, ce11_proms)
n$fisher_test
n$plot

js2264/VplotR documentation built on Jan. 4, 2024, 7:49 p.m.