nucleosomeEnrichment.GRanges: A function to compute nucleosome enrichment over a set of...

View source: R/nucleosome_enrichment.R

nucleosomeEnrichment.GRangesR Documentation

A function to compute nucleosome enrichment over a set of GRanges

Description

A function to compute nucleosome enrichment over a set of GRanges

Usage

## S3 method for class 'GRanges'
nucleosomeEnrichment(x, granges, plus1_nuc_only = FALSE, verbose = TRUE, ...)

Arguments

x

GRanges, paired-end fragments

granges

GRanges, loci to map the fragments onto

plus1_nuc_only

Boolean, should compute nucleosome enrichment only for +1 nucleosome?

verbose

Boolean

...

additional parameters

Value

list

Examples

data(bam_test)
data(ce11_proms)
n <- nucleosomeEnrichment(bam_test, ce11_proms)
n$fisher_test
n$plot

js2264/VplotR documentation built on Jan. 4, 2024, 7:49 p.m.