jsemple19/EMclassifieR
Classify DSMF data using the Expectation Maximisation algorithm

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jsemple19/EMclassifieR: Classify DSMF data using the Expectation Maximisation algorithm
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API

API for jsemple19/EMclassifieR
Classify DSMF data using the Expectation Maximisation algorithm

Global functions
%:% Man page
%>% Man page
%dopar% Man page
SumSqMatrixRows Man page Source code
allClassMeansToGR Man page Source code
canberraDist Man page Source code
classLikelihoodPerRead Man page Source code
classifyAndSortReads Man page Source code
clusterRandomMatrices Man page Source code
combineSilStats Man page Source code
correlationDist Man page Source code
cosineDist Man page Source code
countGenesPerClass Man page Source code
doSingleUMAPplot Man page Source code
em_basic Man page Source code
em_classify Man page Source code
euclideanDist Man page Source code
getAllClassMeansMatrix Man page Source code
getClassMeansMatrix Man page Source code
getClassVote Man page Source code
getDistMatrix Man page Source code
getFullMatrix Man page Source code
getMode Man page Source code
getReadClass Man page Source code
getSilhouetteStats Man page Source code
isMatrixValid Man page Source code
makeDirs Man page Source code
miDist Man page Source code
order_by_prev_cluster Man page Source code
p_converged Man page Source code
p_difference Man page Source code
padEndToRange Man page Source code
padMissingColWithNAs Man page Source code
plotAllClassMeans Man page Source code
plotClassMeans Man page Source code
plotClassMeansWithTracks Man page Source code
plotClassStability Man page Source code
plotClassesSingleMolecule Man page Source code
plotClusteringMetrics Man page Source code
plotEachRepeat Man page Source code
plotFinalClasses Man page Source code
plotGenesPerClass Man page Source code
plotMatPCA Man page Source code
plotMatUMAP Man page Source code
plotPCAofMatrixClasses Man page Source code
plotSmoothedClassMeans Man page Source code
plotUMAPofMatrixClasses Man page Source code
prepareWindows Man page Source code
randomiseMatrixRows Man page Source code
recodeMatrixAsNumeric Man page Source code
reexports Man page
remove0 Man page Source code
removeNArows Man page Source code
rescale_0To1 Man page Source code
rescale_minus1To1 Man page Source code
runClassLikelihoodRpts Man page Source code
runEM Man page Source code
runEMrangeClassNum Man page Source code
runEMrepeats Man page Source code
runEMrepeats_withinSS Man page Source code
selectReadsFromMatrix Man page Source code
silhouettePlot Man page Source code
withinClusterSS Man page Source code
jsemple19/EMclassifieR documentation built on Aug. 12, 2022, 2:57 p.m.

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