combineSilStats: Combine read counts in each class from silStats files

In jsemple19/EMclassifieR: Classify DSMF data using the Expectation Maximisation algorithm

Combine read counts in each class from silStats files

Description

Function takes all region_sample listed in matTable and extracts the read counts in each class from the single line silStats files that are generated when clustering according to known classes.

Usage

combineSilStats(matTable, numClasses, outPath)

Arguments

matTable	Table with list of all samples and regions which have been classified according to known classes.
numClasses	An integer indicating the total number of classes being used
outPath	A string with the path to the directory where the output should go

Value

data.frame of the number of reads in each class, with extra columns for total number of reads, region and sample names

jsemple19/EMclassifieR documentation built on Aug. 12, 2022, 2:57 p.m.