rescale_0To1: Recode matrix
In jsemple19/EMclassifieR: Classify DSMF data using the Expectation Maximisation algorithm
rescale_0To1 R Documentation
Recode matrix
Description
Recode values in methylation matrix from a scale of 0 (no meth) to 1 (meth)
to a scale of -1 (no meth) to 1 (meth). NaN are set to 0 and NAs can
be either 0 or randomly assigned to -0.5 or 0.5
Usage
rescale_0To1(dataMatrix)
Arguments
dataMatrix
A matrix containing methylation values for a
region of the genome using coordinates relative to an anchor point.
dataMatrix[i,j] is the methylation value of sample i at position j.
-1=not methylated, 1=methylated. NAs and NaNs have been assigned the value 0
Value
Matrix with methylation values coded on a -1 to 1 scale
jsemple19/EMclassifieR documentation built on Aug. 12, 2022, 2:57 p.m.
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| rescale_0To1 | R Documentation |
Recode matrix
Description
Recode values in methylation matrix from a scale of 0 (no meth) to 1 (meth) to a scale of -1 (no meth) to 1 (meth). NaN are set to 0 and NAs can be either 0 or randomly assigned to -0.5 or 0.5
Usage
rescale_0To1(dataMatrix)
Arguments
dataMatrix |
A matrix containing methylation values for a region of the genome using coordinates relative to an anchor point. dataMatrix[i,j] is the methylation value of sample i at position j. -1=not methylated, 1=methylated. NAs and NaNs have been assigned the value 0 |
Value
Matrix with methylation values coded on a -1 to 1 scale
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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