orthus_lr_transforms: Log-Ratio transforms for orthus objects

In jsilve24/mongrel: Bayesian Multinomial Logistic Normal Regression

Description

Log-Ratio transforms for orthus objects

Usage

oglr(x, s, V)

oglrInv(x, s, V)

oalr(x, s, d = NULL)

oalrInv(y, s, d = NULL)

oilr(x, s, V = NULL)

oilrInv(y, s, V = NULL)

oclr(x, s)

oclrInv(x, s)

Arguments

x	orthus data array (e.g., first s rows are multinomial parameters or log-ratios)
s	first s rows of x are transformed
V	transformation matrix (defines transform)
d	for ALR, which component (integer position) to take as reference (default is ncol(x)) for alrInv corresponds to column position in untransformed matrix.
y	orthus data array (e.g., first s rows are multinomial parameters or log-ratios)

jsilve24/mongrel documentation built on Jan. 27, 2022, 9:54 p.m.