Files in jsilve24/mongrel

Bayesian Multinomial Logistic Normal Regression

.Rbuildignore

.gitignore

.gitmodules

.travis.yml

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/bassetfit_s3.R R/fit_basset.R R/fit_maltipoo.R R/fit_orthus.R R/fit_pibble.R R/generics_s3.R R/iqlr.R R/kernels.R R/mallard-data.R R/mallard_family-data.R R/maltipoo_sim.R R/maltipoofit_s3.R R/orthus_sim.R R/orthus_transform_wrapper.R R/pibble_plotting.R R/pibble_sim.R R/stray.R R/stray_transforms.R R/stray_utils.R R/strayfit_methods.R R/strayfit_s3.R README.md

_pkgdown.yml

cleanup

configure

configure.ac

data/mallard.RData

data/mallard_family.RData

docs/404.html

docs/articles/index.html

docs/articles/introduction-to-stray.html

docs/articles/introduction-to-stray_files/figure-html/unnamed-chunk-10-1.png

docs/articles/introduction-to-stray_files/figure-html/unnamed-chunk-12-1.png

docs/articles/introduction-to-stray_files/figure-html/unnamed-chunk-13-1.png

docs/articles/introduction-to-stray_files/figure-html/unnamed-chunk-14-1.png

docs/articles/introduction-to-stray_files/figure-html/unnamed-chunk-7-1.png

docs/articles/introduction-to-stray_files/header-attrs-2.2/header-attrs.js

docs/articles/non-linear-models.html

docs/articles/non-linear-models_files/figure-html/unnamed-chunk-3-1.png

docs/articles/non-linear-models_files/figure-html/unnamed-chunk-5-1.png

docs/articles/non-linear-models_files/header-attrs-2.2/header-attrs.js

docs/articles/orthus.html

docs/articles/orthus_files/figure-html/unnamed-chunk-5-1.png

docs/articles/orthus_files/header-attrs-2.2/header-attrs.js

docs/articles/picking_priors.html

docs/articles/picking_priors_files/header-attrs-2.2/header-attrs.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/access_dims.html

docs/reference/as.list.orthusfit.html

docs/reference/as.list.pibblefit.html

docs/reference/as.orthusfit.html

docs/reference/as.pibblefit.html

docs/reference/basset_fit.html

docs/reference/check_dims.html

docs/reference/coef.orthusfit.html

docs/reference/coef.pibblefit.html

docs/reference/compiled_with_openmp.html

docs/reference/conjugateLinearModel.html

docs/reference/convert_orthus_covariance.html

docs/reference/hessVectorProd.html

docs/reference/index.html

docs/reference/kernels.html

docs/reference/lambda_to_iqlr.html

docs/reference/lmvgamma.html

docs/reference/lmvgamma_deriv.html

docs/reference/loglikMaltipooCollapsed.html

docs/reference/loglikPibbleCollapsed.html

docs/reference/mallard.html

docs/reference/mallard_family.html

docs/reference/maltipoo_fit.html

docs/reference/maltipoofit.html

docs/reference/mongrel-deprecated.html

docs/reference/mongrel_tidy_samples.html

docs/reference/name.html

docs/reference/name.orthusfit.html

docs/reference/name.pibblefit.html

docs/reference/name_dims.html

docs/reference/optimMaltipooCollapsed.html

docs/reference/optimPibbleCollapsed.html

docs/reference/orthus_fit.html

docs/reference/orthus_lr_transforms.html

docs/reference/orthus_sim.html

docs/reference/orthus_tidy_samples.html

docs/reference/orthusfit.html

docs/reference/pibble_fit.html

docs/reference/pibble_sim.html

docs/reference/pibble_tidy_samples.html

docs/reference/pibblefit.html

docs/reference/plot.pibblefit-1.png

docs/reference/plot.pibblefit-2.png

docs/reference/plot.pibblefit.html

docs/reference/ppc.html

docs/reference/ppc.pibblefit.html

docs/reference/ppc_summary.html

docs/reference/predict.bassetfit.html

docs/reference/predict.pibblefit.html

docs/reference/print.orthusfit.html

docs/reference/print.pibblefit.html

docs/reference/random_pibble_init.html

docs/reference/refit.html

docs/reference/req.html

docs/reference/req.maltipoo.html

docs/reference/req.maltipoofit.html

docs/reference/req.orthusfit.html

docs/reference/req.pibblefit.html

docs/reference/sample_prior.html

docs/reference/sample_prior.pibblefit-1.png

docs/reference/sample_prior.pibblefit.html

docs/reference/store_coord.html

docs/reference/stray_package.html

docs/reference/stray_transforms.html

docs/reference/summary.orthusfit.html

docs/reference/summary.pibblefit.html

docs/reference/uncollapsePibble.html

docs/reference/verify.bassetfit.html

docs/reference/verify.html

docs/reference/verify.maltipoofit.html

docs/reference/verify.multipoo.html

docs/reference/verify.orthusfit.html

docs/reference/verify.pibblefit.html

inst/CITATION

inst/include/AdamOptim.h

inst/include/LaplaceApproximation.h

inst/include/MaltipooCollapsed.h

inst/include/MatDist.h

inst/include/MatDist_thread.h

inst/include/MatrixAlgebra.h

inst/include/MongrelModelClass.h

inst/include/MultDirichletBoot.h

inst/include/PibbleCollapsed.h

inst/include/SpecialFunctions.h

inst/include/stray.h

inst/stray.png

man/access_dims.Rd man/as.list.orthusfit.Rd man/as.list.pibblefit.Rd man/as.orthusfit.Rd man/as.pibblefit.Rd man/basset_fit.Rd man/check_dims.Rd man/coef.orthusfit.Rd man/coef.pibblefit.Rd man/conjugateLinearModel.Rd man/convert_orthus_covariance.Rd man/kernels.Rd man/lambda_to_iqlr.Rd man/lmvgamma.Rd man/lmvgamma_deriv.Rd man/loglikMaltipooCollapsed.Rd man/loglikPibbleCollapsed.Rd man/mallard.Rd man/mallard_family.Rd man/maltipoo_fit.Rd man/maltipoofit.Rd man/mongrel-deprecated.Rd man/name.Rd man/name.orthusfit.Rd man/name.pibblefit.Rd man/name_dims.Rd man/optimMaltipooCollapsed.Rd man/optimPibbleCollapsed.Rd man/orthus_fit.Rd man/orthus_lr_transforms.Rd man/orthus_sim.Rd man/orthus_tidy_samples.Rd man/orthusfit.Rd man/pibble_fit.Rd man/pibble_sim.Rd man/pibble_tidy_samples.Rd man/pibblefit.Rd man/plot.pibblefit.Rd man/ppc.Rd man/ppc.pibblefit.Rd man/ppc_summary.Rd man/predict.bassetfit.Rd man/predict.pibblefit.Rd man/print.orthusfit.Rd man/print.pibblefit.Rd man/random_pibble_init.Rd man/refit.Rd man/req.Rd man/req.maltipoofit.Rd man/req.orthusfit.Rd man/req.pibblefit.Rd man/sample_prior.Rd man/sample_prior.pibblefit.Rd man/store_coord.Rd man/stray_package.Rd man/stray_transforms.Rd man/summary.orthusfit.Rd man/summary.pibblefit.Rd man/uncollapsePibble.Rd man/verify.Rd man/verify.bassetfit.Rd man/verify.maltipoofit.Rd man/verify.orthusfit.Rd man/verify.pibblefit.Rd

src/ConjugateLinearModel.cpp

src/Makevars.in

src/Makevars.win

src/MaltipooCollapsed_LGH.cpp

src/MaltipooCollapsed_Optim.cpp

src/MatrixAlgebra.cpp

src/PibbleCollapsed_LGH.cpp

src/PibbleCollapsed_Optim.cpp

src/PibbleCollapsed_Uncollapse.cpp

src/RcppExports.cpp

src/SpecialFunctions.cpp

src/test_LaplaceApproximation.cpp

src/test_MultDirichletBoot.cpp

src/test_utils.cpp

stray.Rproj

tests/testthat.R

tests/testthat/.gitignore

tests/testthat/Rplots.pdf tests/testthat/test-basset.R tests/testthat/test-hessian.R tests/testthat/test-hvp.R tests/testthat/test-iqlr.R tests/testthat/test-kernels.R tests/testthat/test-laplaceapproximation.R tests/testthat/test-linesearch.R tests/testthat/test-maltipoo.R tests/testthat/test-matdist.R tests/testthat/test-mongrelfit-methods.R tests/testthat/test-multdirichletboot.R tests/testthat/test-orthus-transforms.R tests/testthat/test-orthus.R tests/testthat/test-pibble.R tests/testthat/test-sylvester-speedups.R tests/testthat/test-transforms.R tests/testthat/test-utils.R

vignettes/.gitignore

vignettes/bibliography.bib

vignettes/introduction-to-stray.Rmd vignettes/non-linear-models.Rmd vignettes/orthus.Rmd vignettes/picking_priors.Rmd

jsilve24/mongrel documentation built on Jan. 27, 2022, 9:54 p.m.