R/mallard-data.R

In jsilve24/mongrel: Bayesian Multinomial Logistic Normal Regression

#' Data from Silverman et al. (2018) Microbiome
#' 
#' High Resolution (hourly and daily) sampling of 4 in vitro artificial gut models
#' with many technical replicates to identify technical variation. 
#' 
#' This data is at the sequence variant level. Data at the family level
#' processed as in Silverman et al. 2018 is given in \code{\link{mallard_family}}
#' 
#' @docType data
#' @name mallard
#' @usage data(mallard)
#' @format An object of class \code{\link[phyloseq]{phyloseq-class}}
#' @references Silverman et al. "Dynamic linear models guide design and 
#'   analysis of microbiota studies within artificial human guts". 
#'   Microbiome 2018 6:202
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