context("Test Suite 4 (E2E) --> Endpoint 8.1")
library(RSelenium)
library(testthat)
library(EpiEstim)
source("functions.R", local=TRUE)
# ---------------------------------------------------------------------------#
# Test 1 - Different si_sample (1) #
# ---------------------------------------------------------------------------#
drivers <- getRemDrivers("Test Suite 4 (E2E) --> Endpoint 8.1 (Test 1)")
rD <- drivers$rDr
remDr <- drivers$remDr
appOut <- NULL
openRemDriver(remDr)
tryCatch({
test_that("can connect to app", {
connectToApp(remDr)
})
test_that("app is ready within 30 seconds", {
waitForAppReady(remDr)
})
test_that("can walk through the app to endpoint state (Test 1)", {
# Walk the app through to endpoint state with default inputs
click(remDr, pages$state1.1$selectors$preloaded_data_button)
clickNext(remDr) # Move to state 2.2
waitForStateDisplayed(remDr, "2.2")
click(remDr, pages$state2.2$selectors$dataset_option_1_input)
clickNext(remDr) # Move to state 5.1
waitForStateDisplayed(remDr, "5.1")
click(remDr, pages$state5.1$selectors$exposure_data_yes_input)
clickNext(remDr) # Move to state 6.1
waitForStateDisplayed(remDr, "6.1")
click(remDr, pages$state6.1$selectors$si_data_type_preloaded_button)
clickNext(remDr) # Move to state 7.1
waitForStateDisplayed(remDr, "7.1")
click(remDr, pages$state7.1$selectors$dataset_option_2_input) # <---
clickNext(remDr) # Move to state 8.1
waitForStateDisplayed(remDr, "8.1")
click(remDr, pages$state8.1$selectors$distribution_option_1_input)
sendKeys(remDr, pages$state8.1$selectors$seed_input, "1")
clickGo(remDr)
Sys.sleep(1)
waitForAppReady(remDr)
appOut <<- extractOutputFromApp(remDr)
closeRemDrivers(remDr, rD)
})
},
error = function(e) {
closeRemDrivers(remDr, rD)
stop(e)
})
test_that("Test 1 output matches", {
# Compare the output to EpiEstim's output
incid <- read.csv(paste(appDir, 'datasets/IncidenceData/H1N1Pennsylvania2009.csv', sep='/'), header=FALSE)
incid <- EpiEstim:::process_I(incid)
sample <- read.csv(paste(appDir, "datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_G.csv", sep="/"), header=FALSE)
sample <- EpiEstim:::process_si_sample(sample)
epiEstimOut <- estimate_R(incid, method="si_from_sample", si_sample=sample,
config=list(n2=100, seed=1,
t_start=2:26, t_end=8:32)
)
compareOutputFromApp(appOut, epiEstimOut)
})
# ---------------------------------------------------------------------------#
# Test 2 - Different si_sample (2) #
# ---------------------------------------------------------------------------#
drivers <- getRemDrivers("Test Suite 4 (E2E) --> Endpoint 8.1 (Test 2)")
rD <- drivers$rDr
remDr <- drivers$remDr
appOut <- NULL
openRemDriver(remDr)
tryCatch({
test_that("can connect to app", {
connectToApp(remDr)
})
test_that("app is ready within 30 seconds", {
waitForAppReady(remDr)
})
test_that("can walk through the app to endpoint state (Test 2)", {
# Walk the app through to endpoint state with default inputs
click(remDr, pages$state1.1$selectors$preloaded_data_button)
clickNext(remDr) # Move to state 2.2
waitForStateDisplayed(remDr, "2.2")
click(remDr, pages$state2.2$selectors$dataset_option_1_input)
clickNext(remDr) # Move to state 5.1
waitForStateDisplayed(remDr, "5.1")
click(remDr, pages$state5.1$selectors$exposure_data_yes_input)
clickNext(remDr) # Move to state 6.1
waitForStateDisplayed(remDr, "6.1")
click(remDr, pages$state6.1$selectors$si_data_type_preloaded_button)
clickNext(remDr) # Move to state 7.1
waitForStateDisplayed(remDr, "7.1")
click(remDr, pages$state7.1$selectors$dataset_option_3_input) # <---
clickNext(remDr) # Move to state 8.1
waitForStateDisplayed(remDr, "8.1")
click(remDr, pages$state8.1$selectors$distribution_option_1_input)
sendKeys(remDr, pages$state8.1$selectors$seed_input, "1")
clickGo(remDr)
Sys.sleep(1)
waitForAppReady(remDr)
appOut <<- extractOutputFromApp(remDr)
closeRemDrivers(remDr, rD)
})
},
error = function(e) {
closeRemDrivers(remDr, rD)
stop(e)
})
test_that("Test 2 output matches", {
# Compare the output to EpiEstim's output
incid <- read.csv(paste(appDir, 'datasets/IncidenceData/H1N1Pennsylvania2009.csv', sep='/'), header=FALSE)
incid <- EpiEstim:::process_I(incid)
sample <- read.csv(paste(appDir, "datasets/SIPosteriorSamples/H1N1USA2009_SISamples_G.csv", sep="/"), header=FALSE)
sample <- EpiEstim:::process_si_sample(sample)
epiEstimOut <- estimate_R(incid, method="si_from_sample", si_sample=sample,
config=list(n2=100, seed=1, t_start=2:26, t_end=8:32)
)
compareOutputFromApp(appOut, epiEstimOut)
})
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