Files in jtipton25/pgR
Bayesian Polya-Gamma Regression

.Rbuildignore

.Rproj.user/4213BBF5/cpp-complilation-config

.Rproj.user/4213BBF5/sources/prop/4C51C4F0

.Rproj.user/4213BBF5/sources/prop/6B20F638

.Rproj.user/4213BBF5/sources/prop/INDEX

.Rproj.user/shared/notebooks/patch-chunk-names

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/calc_ll.R R/check-inits.R R/check-input.R R/check-params.R R/check-priors.R R/correlation-function.R R/counts-to-propotions.R R/default-inits.R R/default-params.R R/default-priors.R R/log-sum-exp.R R/make_alpha.R R/make_gelman_rubin.R R/pg-mvgp-univariate-mra.R R/pg-mvgp-univariate.R R/pgLM.R R/pgSPLM.R R/pgSTLM.R R/pg_lm.R R/pg_splm.R R/pg_splm_mra.R R/pg_stlm.R R/pg_stlm_latent_overdispersed.R R/pg_stlm_mra.R R/pg_stlm_overdispersed.R R/pgdraw.R R/predicates.R R/predict-pgLM.R R/predict-pgSPLM.R R/predict-pgSTLM.R R/predict-pg_lm.R R/predict-pg_mvgp_univariate.R R/predict-pg_mvgp_univariate_mra.R R/predict-pg_splm.R R/predict-pg_splm_mra.R R/predict-pg_stlm.R R/predict-pg_stlm_latent_overdispersed.R R/predict-pg_stlm_mra.R R/predict-pg_stlm_overdispersed.R R/softmax.R R/update-tuning.R R/utils.R R/zzz.R README.Rmd README.md

_pkgdown.yml

codecov.yml

development/convert-to-coda.R development/pgSPVLM.R development/pg_spvlm.R

docs/404.html

docs/LICENSE-text.html

docs/articles/index.html

docs/articles/pgLM.html

docs/articles/pglm-unnamed-chunk-10-1.png

docs/articles/pglm-unnamed-chunk-12-1.png

docs/articles/pglm-unnamed-chunk-3-1.png

docs/articles/pglm-unnamed-chunk-4-1.png

docs/articles/pglm-unnamed-chunk-6-1.png

docs/articles/pglm-unnamed-chunk-7-1.png

docs/articles/pglm-unnamed-chunk-9-1.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/check_corr_fun.html

docs/reference/check_inits_pgLM.html

docs/reference/check_input.html

docs/reference/check_input_pgSTLM.html

docs/reference/check_input_spatial.html

docs/reference/check_params.html

docs/reference/check_priors.html

docs/reference/convert_to_coda.html

docs/reference/correlation_function.html

docs/reference/counts_to_proportions.html

docs/reference/default_inits_pgLM.html

docs/reference/default_inits_pgSPLM.html

docs/reference/default_params.html

docs/reference/default_priors_pgLM.html

docs/reference/default_priors_pgSPLM.html

docs/reference/default_priors_pgSTLM.html

docs/reference/dmvnrm_arma_mc.html

docs/reference/eta_to_pi.html

docs/reference/expit.html

docs/reference/figures/clean-and-rebuild.png

docs/reference/figures/github-clone.png

docs/reference/figures/install-and-restart.png

docs/reference/figures/open-project-1.png

docs/reference/figures/open-project-2.png

docs/reference/figures/open-project-3.png

docs/reference/figures/terminal-clone.png

docs/reference/index.html

docs/reference/is_integer.html

docs/reference/is_numeric.html

docs/reference/is_numeric_matrix.html

docs/reference/is_numeric_vector.html

docs/reference/is_positive_integer.html

docs/reference/is_positive_numeric.html

docs/reference/is_sympd_matrix.html

docs/reference/logit.html

docs/reference/logsumexp.html

docs/reference/make_Q.html

docs/reference/make_Q_alpha_2d.html

docs/reference/make_Q_alpha_tau2.html

docs/reference/make_alpha.html

docs/reference/make_gelman_rubin.html

docs/reference/mcmc.html

docs/reference/mra_wendland_2d.html

docs/reference/mra_wendland_2d_pred.html

docs/reference/pgLM.html

docs/reference/pgR-package.html

docs/reference/pgR.html

docs/reference/pgSPLM.html

docs/reference/pgSPVLM.html

docs/reference/pgSTLM.html

docs/reference/pg_mvgp.html

docs/reference/pg_mvgp_univariate.html

docs/reference/pg_mvgp_univariate_mra.html

docs/reference/pgdraw-1.png

docs/reference/pgdraw.html

docs/reference/pgdraw.moments.html

docs/reference/predict_pgLM.html

docs/reference/predict_pgSPLM.html

docs/reference/predict_pgSTLM.html

docs/reference/predict_pg_mvgp_univariate.html

docs/reference/predict_pg_mvgp_univariate_mra.html

docs/reference/rcpp_pgdraw.html

docs/reference/rcpp_pgdraw_approx.html

docs/reference/rmvn_arma.html

docs/reference/rmvn_arma_scalar.html

docs/reference/setup_splines.html

docs/reference/softmax.html

docs/reference/update_tuning.html

docs/reference/update_tuning_mat.html

docs/reference/update_tuning_mv.html

docs/reference/update_tuning_mv_mat.html

docs/reference/update_tuning_vec.html

inst/include/pgR.h

inst/include/pgR_RcppExports.h

man/figures/clean-and-rebuild.png

man/figures/github-clone.png

man/figures/install-and-restart.png

man/figures/open-project-1.png

man/figures/open-project-2.png

man/figures/open-project-3.png

man/figures/terminal-clone.png

man/is_dist_matrix.Rd man/is_integer.Rd man/is_integer_matrix.Rd man/is_numeric.Rd man/is_numeric_matrix.Rd man/is_numeric_vector.Rd man/is_positive_integer.Rd man/is_positive_numeric.Rd man/is_positive_numeric_matrix.Rd man/is_sympd_matrix.Rd man/logit.Rd man/logsumexp.Rd man/make_alpha.Rd man/make_gelman_rubin.Rd man/pgLM.Rd man/pgR.Rd man/pgSPLM.Rd man/pgSTLM.Rd man/pg_lm.Rd man/pg_mvgp_univariate.Rd man/pg_mvgp_univariate_mra.Rd man/pg_splm.Rd man/pg_splm_mra.Rd man/pg_stlm.Rd man/pg_stlm_latent_overdispersed.Rd man/pg_stlm_mra.Rd man/pg_stlm_overdispersed.Rd man/pgdraw.Rd man/pgdraw.moments.Rd man/plot_correlation_function.Rd man/plot_covariance_function.Rd man/predict_pgLM.Rd man/predict_pgSPLM.Rd man/predict_pgSTLM.Rd man/predict_pg_lm.Rd man/predict_pg_mvgp_univariate.Rd man/predict_pg_mvgp_univariate_mra.Rd man/predict_pg_splm.Rd man/predict_pg_splm_mra.Rd man/predict_pg_stlm.Rd man/predict_pg_stlm_latent_overdispersed.Rd man/predict_pg_stlm_mra.Rd man/predict_pg_stlm_overdispersed.Rd man/rcpp_pgdraw.Rd man/rcpp_pgdraw_approx.Rd man/rmvn_arma.Rd man/rmvn_arma_scalar.Rd man/softmax.Rd man/update_tuning.Rd man/update_tuning_mat.Rd man/update_tuning_mv.Rd man/update_tuning_mv_mat.Rd man/update_tuning_vec.Rd

pgR.Rproj

scripts/build_vignettes.R scripts/explore-pg-approximations.R

scripts/pg.bib

scripts/pg_lm-simulation-count-variations.Rmd scripts/pg_lm-simulation.Rmd scripts/pg_logit-simulation.Rmd scripts/pg_sp_lm-simulation-exponential.Rmd scripts/pg_sp_lm-simulation-matern.Rmd scripts/pg_splm_mra_simulation.Rmd scripts/pg_stlm_model_selection.R scripts/pg_stlm_mra_simulation.Rmd scripts/simulation_pg_stlm_latent_overdispersed.R scripts/simulation_pg_stlm_mra.R scripts/simulation_pg_stlm_overdispersed.R scripts/timings-beta-full-conditionals.Rmd scripts/timings-pgdraw-openMP.Rmd

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/dmvn_arma_mc.cpp

src/rcpp_pgdraw.cpp

src/rmvn_arma.cpp

src/rmvn_arma_scalar.cpp

vignettes/pg.bib

vignettes/pgSTLM.Rmd.orig

vignettes/pg_lm.Rmd

vignettes/pg_lm.Rmd.orig

vignettes/plot-beta-1.png

vignettes/plot-beta-sampled-data-1.png

vignettes/plot-dag-1.png

vignettes/plot-dag-pg-1.png

vignettes/plot-data-1.png

vignettes/plot-trace-1.png

vignettes/trace-plot-sampled-data-1.png

jtipton25/pgR documentation built on July 8, 2022, 12:44 a.m.

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jtipton25/pgR
Bayesian Polya-Gamma Regression

Files in jtipton25/pgR
Bayesian Polya-Gamma Regression

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jtipton25/pgR Bayesian Polya-Gamma Regression

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jtipton25/pgR
Bayesian Polya-Gamma Regression

Files in jtipton25/pgR
Bayesian Polya-Gamma Regression