counts.wetdry: Expression counts for the pots drought experiment
In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass
Description
A dataset containing the counts of 17636 genes
and 96 individuals, grown in pots in the UT, Austin Greenhouses. The
corresponding raw data were generated on a
ABI SOLID platform and published by E. Meyer, BMC Genomics (2014).
These counts were recalled with the Switchgrass v2.1 annotation using
a custom BWA - HTSeq pipeline, curtosy of Scott Schwartz, 1-Feb 2016.
The genes included here were filtered by mean count, where any gene
with <5 raw counts on average were excluded.
The individuals were further culled here, so that plants subjected to the
drought recovery treatment are not included.
Usage
1
Format
A data frame with 17636 rows and 96 variables:
- rownames
the names of each gene, Panicum virgatum annotation (v2.1)
- colnames
the names of each library, described in the
accompanying info.wetdry dataset
jtlovell/PhyGenomicsData.PV2016 documentation built on May 20, 2019, 3:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A dataset containing the counts of 17636 genes and 96 individuals, grown in pots in the UT, Austin Greenhouses. The corresponding raw data were generated on a ABI SOLID platform and published by E. Meyer, BMC Genomics (2014). These counts were recalled with the Switchgrass v2.1 annotation using a custom BWA - HTSeq pipeline, curtosy of Scott Schwartz, 1-Feb 2016. The genes included here were filtered by mean count, where any gene with <5 raw counts on average were excluded. The individuals were further culled here, so that plants subjected to the drought recovery treatment are not included.
Usage
1 |
Format
A data frame with 17636 rows and 96 variables:
- rownames
the names of each gene, Panicum virgatum annotation (v2.1)
- colnames
the names of each library, described in the accompanying info.wetdry dataset
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.