infocyl: Experimental design data for the 2011 Pickle Cylinder drought...

In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass

Description

A dataset containing the physiology and experimental design for 62 individuals, grown in cylinders at the Pickle Research Campus of UT Austin. More detailed information regarding the timing and days of sample collection can be found in the supplementary material of Lovell, Shakirov et al.

Usage

infocyl

Format

A data frame with 62 rows and 17 variables:

pot

A unique identifier for the plant, used as the repeated measure

geno

The Switchgrass genotype: only AP13

id

The library preparation ID. Corresponds to column names in countscyl

trt

The experimental treatment. Wet or Dry

psi

Midday leaf water potential, measured at the time of tissue collection

RWC

Relative water content of leaf, measured at the time of tissue collection

LDMC

Leaf dry mass content, measured at the time of tissue collection

spad

Leaf dry mass content, measured at the time of tissue collection

psi.delta

Leaf dry mass content, measured at the time of tissue collection

HHMMSS

Time of measurment / time of tissue collection

FTime

..., measured at the time of tissue collection

Photo

Photosynthetic rate, measured at the time of tissue collection

Cond

Stomatal Conductance, measured at the time of tissue collection

Ci

Internal Leaf CO2 concentration, measured at the time of tissue collection

time_trt

Character vector corresponding to all time*treatment combinations, Used for contrasts

time_trt.mat

Numeric vector corresponding to all time*treatment combinations, Used for contrasts

jtlovell/PhyGenomicsData.PV2016 documentation built on May 20, 2019, 3:14 a.m.