info1314: Experimental design data for the 2013-2014 Rainout Shelter...
In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass
Description
A dataset containing the physiology and experimental design for the
and 51 individuals, grown under rainout shelters at either th USDA facility
in Temple, TX or the Ladybird Johnson Wildflower Center, Austin TX during 2013 and 2014.
More detailed information regarding the timing and days of sample collection
can be found in the supplementary material of Lovell, Shakirov et al. ().
Usage
1
Format
A data frame with 51 rows and 15 variables:
- PLOT
A unique identifier for the plant within each year
- Year
The year of sample collection
- Month
The month of sampling collection
- ID
The sequencing library of the sample. Corresponds to column names in counts1314
- Location
The experimental site, TMP=TEMPLE USDA facility,
WFC=Ladybird Johnson Wildflower Center
- Block
The spatial blocking variable, unique to location
- Treatment
The experimental treatment. Low= the 100year low precipitation value,
High=the 100year high precipitation value
- Genotype
The genotype studied. Here only AP13
- PDWP
Pre-dawn leaf water potential
- MDWP
Midday leaf water potential, measured at the time of tissue collection
- order
The sampling order, early samples correspond to 11:00, latest samples are before 13:00
- block_unique
Unique year*site*block combination
- Year_Location_Treatment
Unique year*location*treatment combination, used for contrasts
- Year_Location_Treatment.mat
Numberic Unique year*location*treatment combination, used for contrasts
- sb_unique
The unique identifier for each subblock, regardless of year.
Used as the blocking variable in statistical analyses
jtlovell/PhyGenomicsData.PV2016 documentation built on May 20, 2019, 3:14 a.m.
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Description
A dataset containing the physiology and experimental design for the and 51 individuals, grown under rainout shelters at either th USDA facility in Temple, TX or the Ladybird Johnson Wildflower Center, Austin TX during 2013 and 2014. More detailed information regarding the timing and days of sample collection can be found in the supplementary material of Lovell, Shakirov et al. ().
Usage
1 |
Format
A data frame with 51 rows and 15 variables:
- PLOT
A unique identifier for the plant within each year
- Year
The year of sample collection
- Month
The month of sampling collection
- ID
The sequencing library of the sample. Corresponds to column names in counts1314
- Location
The experimental site, TMP=TEMPLE USDA facility, WFC=Ladybird Johnson Wildflower Center
- Block
The spatial blocking variable, unique to location
- Treatment
The experimental treatment. Low= the 100year low precipitation value, High=the 100year high precipitation value
- Genotype
The genotype studied. Here only AP13
- PDWP
Pre-dawn leaf water potential
- MDWP
Midday leaf water potential, measured at the time of tissue collection
- order
The sampling order, early samples correspond to 11:00, latest samples are before 13:00
- block_unique
Unique year*site*block combination
- Year_Location_Treatment
Unique year*location*treatment combination, used for contrasts
- Year_Location_Treatment.mat
Numberic Unique year*location*treatment combination, used for contrasts
- sb_unique
The unique identifier for each subblock, regardless of year. Used as the blocking variable in statistical analyses
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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