info12: Experimental design data for the 2012 Rainout Shelter drought...
In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass
Description
A dataset containing the physiology and experimental design for
40 individuals, grown under rainout shelters at the USDA facility
in Temple, TX during 2012.
More detailed information regarding the timing and days of sample collection
can be found in the supplementary material of Lovell, Shakirov et al.
Usage
1
Format
A data frame with 40 rows and 13 variables:
- PLOT
A unique identifier for the plant within each year
- Year
The year of sample collection
- Month
The month of sampling collection
- ID
The sequencing library of the sample. Corresponds to column names in counts12
- Location
The experimental site, TMP=TEMPLE USDA facility
- Treatment
The experimental treatment.
Low= the 100year low precipitation value,
25th= the 25th percentile of precipitation over the last 100 years
mean= the 50th percentile of precipitation over the last 100 years
ambient= the weekly rainfall of 2012 during the experiment
75th= the 75th percentile of precipitation over the last 100 years
High=the 100year high precipitation value
- PDWP
Pre-dawn leaf water potential. Data for this, MDWP and order are only available
for the low, mean and high treatments
- MDWP
Midday leaf water potential, measured at the time of tissue collection
- order
The sampling order, early samples correspond to 11:00, latest samples are before 13:00
- Treatment.num
Numberic treatment variable, used for contrasts
- Site
Numeric classifier related to the PLOT variable
- Block
The spatial blocking variable
- Sub_Block
The spatial split-plot variable
jtlovell/PhyGenomicsData.PV2016 documentation built on May 20, 2019, 3:14 a.m.
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Description
A dataset containing the physiology and experimental design for 40 individuals, grown under rainout shelters at the USDA facility in Temple, TX during 2012. More detailed information regarding the timing and days of sample collection can be found in the supplementary material of Lovell, Shakirov et al.
Usage
1 |
Format
A data frame with 40 rows and 13 variables:
- PLOT
A unique identifier for the plant within each year
- Year
The year of sample collection
- Month
The month of sampling collection
- ID
The sequencing library of the sample. Corresponds to column names in counts12
- Location
The experimental site, TMP=TEMPLE USDA facility
- Treatment
The experimental treatment. Low= the 100year low precipitation value, 25th= the 25th percentile of precipitation over the last 100 years mean= the 50th percentile of precipitation over the last 100 years ambient= the weekly rainfall of 2012 during the experiment 75th= the 75th percentile of precipitation over the last 100 years High=the 100year high precipitation value
- PDWP
Pre-dawn leaf water potential. Data for this, MDWP and order are only available for the low, mean and high treatments
- MDWP
Midday leaf water potential, measured at the time of tissue collection
- order
The sampling order, early samples correspond to 11:00, latest samples are before 13:00
- Treatment.num
Numberic treatment variable, used for contrasts
- Site
Numeric classifier related to the PLOT variable
- Block
The spatial blocking variable
- Sub_Block
The spatial split-plot variable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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