API for jtlovell/qtlTools
Data Processing and Plotting in Association with R/qtl

Global functions
LikePheVector Source code
adjust.rf.ri Source code
bayesint Source code
c.cross Source code
calc.pairprob Source code
calc.penalties Source code
calc.plod Source code
calcCis Man page Source code
calcPermPval Source code
charround Source code
checkStepwiseqtlStart Source code
checkcovar Source code
chrnames Source code
clean Source code
clean.cross Source code
cleanGeno Source code
comparecrosses Source code
comparegeno Source code
convert Source code
convert.map Source code
convert.scanone Source code
convert.scantwo Source code
convert2riself Source code
convert2risib Source code
convert2sa Source code
countqtlterms Source code
covScanQTL Man page Source code
create.map Source code
drop.dupmarkers Source code
drop.markers Source code
drop.nullmarkers Source code
dropByDropone Man page Source code
dropSimilarMarkers Man page Source code
dropXcol Source code
fill.geno Source code
find.flanking Source code
find.marker Source code
find.markerpos Source code
find.pheno Source code
find.pseudomarker Source code
find.pseudomarkerpos Source code
findDupMarkers Source code
findGenecM Man page Source code
findGenesInterval Man page Source code
flip.order Source code
formMarkerCovar Source code
geno.crosstab Source code
geno.table Source code
geno2cross Man page Source code
genotab.em Source code
getgenonames Source code
getid Source code
getsex Source code
imf.cf Source code
imf.h Source code
imf.k Source code
imf.m Source code
imf.stahl Source code
inferMarkerPos Man page Source code
jittermap Source code
locateXO Source code
lodint Source code
makeSSmap Source code
markernames Source code
matchMarkerOrder Man page Source code
matchchr Source code
meanScan Man page Source code
mf.cf Source code
mf.h Source code
mf.k Source code
mf.m Source code
mf.stahl Source code
movemarker Source code
newLG Man page Source code
nqrank Source code
nullmarkers Source code
pal_jtl4_pairs Source code
phenames Source code
plotGeneModel Man page Source code
polygenicQTL Man page Source code
print.map Source code
print.summary.map Source code
pull.markers Source code
pullMap Man page Source code
pullSigQTL Man page Source code
qtlSignTest Man page Source code
qtlStats Man page Source code
qtlversion Source code
quantnorm Man page Source code
reDoCross Man page Source code
reduce2grid Source code
repPickMarkerSubset Man page Source code
repRipple Man page Source code
rescalemap Source code
reviseXdata Source code
revisecovar Source code
scanone.GWERk Man page Source code
scanone.lmer Man page Source code
scanone.perm Source code
scanone.perm.engine Source code
scanoneXnull Source code
scantwo.GWERk Man page Source code
scantwoperm2scanoneperm Source code
segmentsOnMap Man page Source code
segmentsOnPeaks Man page Source code
shiftmap Source code
splitText Man page Source code
stepwiseqtl.int Man page Source code
strip.partials Source code
subset.cross Source code
subset.map Source code
swGenotype Man page Source code
switch.order Source code
switchAlleles Source code
testchr Source code
theme_jtl Man page Source code
theme_jtlbar Man page Source code
tspOrder Man page Source code
typingGap Source code
updateParallelRNG Source code
jtlovell/qtlTools documentation built on Oct. 3, 2018, 6:57 a.m.