qtlSignTest: Conduct the sign test for expression bias

In jtlovell/qtlTools: Data Processing and Plotting in Association with R/qtl

Description

qtlSignTest Uses the Fraser etc. sign test to assess neutral evolution for a set of expression phenotypes

Usage

qtlSignTest(effect = NULL, trans.effect = NULL, verbose = T, ...)

Arguments

effect	Signed cis-eQTL or allele-specific expression log2-fold change data
trans.effect	If effect is signed cis-eQTL effect, one can test the independence of cis and trans eQTL evolution. Here provide effect effect of trans QTL.
verbose	should results be printed to console?
...	Additional arguments to pass on to fisher.test / binom.test, such as null hypotheses.
id	label for output

Details

See ...

Value

The results of a binomial test (or Fisher's exact test if trans.dir is specified).

jtlovell/qtlTools documentation built on May 20, 2019, 3:14 a.m.