scanone.GWERk: Scanone qtl analysis permitting GWERk analysis.
In jtlovell/qtlTools: Data Processing and Plotting in Association with R/qtl
Description
scanone.GWERk see qtl::scanone for details. GWERk = 0 runs normal scanone
permutations. Otherwise GWERk perms are used.
Usage
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scanone.GWERk(cross, chr, pheno.col = 1, model = c("normal", "binary",
"2part", "np"), method = c("em", "imp", "hk", "ehk", "mr", "mr-imp",
"mr-argmax"), addcovar = NULL, intcovar = NULL, weights = NULL,
use = c("all.obs", "complete.obs"), upper = FALSE,
ties.random = FALSE, start = NULL, maxit = 4000, tol = 1e-04,
n.perm, perm.Xsp = FALSE, perm.strata = NULL, verbose,
batchsize = 250, n.cluster = 1, ind.noqtl, GWERk = 0)
jtlovell/qtlTools documentation built on May 20, 2019, 3:14 a.m.
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Description
scanone.GWERk see qtl::scanone for details. GWERk = 0 runs normal scanone
permutations. Otherwise GWERk perms are used.
Usage
1 2 3 4 5 6 7 | scanone.GWERk(cross, chr, pheno.col = 1, model = c("normal", "binary",
"2part", "np"), method = c("em", "imp", "hk", "ehk", "mr", "mr-imp",
"mr-argmax"), addcovar = NULL, intcovar = NULL, weights = NULL,
use = c("all.obs", "complete.obs"), upper = FALSE,
ties.random = FALSE, start = NULL, maxit = 4000, tol = 1e-04,
n.perm, perm.Xsp = FALSE, perm.strata = NULL, verbose,
batchsize = 250, n.cluster = 1, ind.noqtl, GWERk = 0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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