f1.score.prs: f1.score.prs : Calcul of the F1 score and the Polygenic Risk...

In jumentib/useFonc: Useful Functions

Description

f1.score.prs : Calcul of the F1 score and the Polygenic Risk Score (PRS) for sparse regression

Usage

f1.score.prs(sparse.effect, causal, genotype, phenotype)

Arguments

sparse.effect	: effect from a sparse regression
causal	: true causal SNP
genotype	: genotype –> one row per SNP, and one column per sample.
phenotype	: phenotype of interest

Value

Return the F1 Score, the precision, the recall, the prediction of the phenotype and the r2 between the phenotype and x.pred.

jumentib/useFonc documentation built on Nov. 18, 2019, 3:17 p.m.