process.MSstats: Process feature intensities with MSstats default parameters

In jwinget/mrmr: Functions to improve MRM data processing with MSstats

Description

Normalizes and processes MRM data using default/recommended parameters for MSstats. Saves result to disk and reloads on subsequent knits unless recompute is True

Usage

process.MSstats(raw.features, filepath = "MSstats.rds", recompute = F)

Arguments

raw.features	MSstats feature data. Can be generated by preprocess.MSstats()
recompute	Boolean on whether to recompute normalization. Default is False
file.path	Path to save the resulting normalized data object

Value

MSstats object containing normalized feature data

Examples

rd.proposed <- process.MSstats(rd.msstats, filepath=paste0(proj.dir,'Analysis/MSstats.rds'), recompute = F)

jwinget/mrmr documentation built on Nov. 4, 2019, 3:28 p.m.