select.anchor: Select constant anchor loci from single-cell ATAC-seq...

In jwyang16/DECODER: DECODER: DECOnvolution of DNA accEssibility using anchor-based Regression

Description

This function is used to select constant anchor loci from scATAC-seq reference

Usage

select.anchor(celltype.ref, ths = 0.95)

Arguments

celltype.ref	scATAC-seq reference
ths	threshold for choosing loci whose differences are lower than ths% of total differences as constant anchors. Default=0.95

Value

anchor.idx	the index of constant anchor loci
anchor.locus	the profile of constant anchor loci

Examples

## Not run: 
anchor<-select.anchor(celltype.ref,ths=0.95)

## End(Not run)

jwyang16/DECODER documentation built on Nov. 4, 2019, 3:28 p.m.