select.variable: Select highly variable loci from single-cell ATAC-seq...

In jwyang16/DECODER: DECODER: DECOnvolution of DNA accEssibility using anchor-based Regression

Description

This function is used to select highly variable anchors from scATAC-seq reference

Usage

select.variable(celltype.ref, ths = 0.05)

Arguments

celltype.ref	scATAC-seq reference
ths	threshold for choosing loci whose differences are higher than ths% of total differences as variable anchors. Default=0.05.

Value

variable.idx

the index of highly variable loci

Examples

## Not run: 
variable.idx<-select.variable(celltype.ref,ths=0.05)

## End(Not run)

jwyang16/DECODER documentation built on Nov. 4, 2019, 3:28 p.m.