peakcalling: do peak calling

In jwyang16/DECODER: DECODER: DECOnvolution of DNA accEssibility using anchor-based Regression

Description

This fuction is used to do peak calling.

Usage

peakcalling(bam_file_path, genome = c("hg19", "hg38", "mm9", "mm10"))

Arguments

bam_file_path	path to single-cell bam files (The number of sc bam files must >= 2.)
genome	genome assembly to be used

Value

peak	peak regions from merged single cells

Examples

## Not run: 
peak<-peakcalling('path/to/bam/files',genome='hg19')

## End(Not run)

jwyang16/DECODER documentation built on Nov. 4, 2019, 3:28 p.m.