DESeq2_process: DESeq2_process() Function

In jyoh1248/MyoSignature: Myocarditis signature proejct

DESeq2_process() Function

Description

This function proceed with DESeq2 to get vst matrix

Usage

DESeq2_process(
  raw_counts,
  samples_metadata,
  design_formula,
  batch,
  blindRun,
  outDIR
)

Arguments

raw_counts	: raw counts matrix
samples_metadata	: metadata where names of raw counts match with metadata
design_formula	: formula used for DESeq2 process
batch	: batch = NULL if not, run batch correction with limma packages (Chip variable)
blindRun	: no messages during DESeq2 process
outDIR	: directory to save plots

Value

normalised matrix

Examples

DESeq2_process()

jyoh1248/MyoSignature documentation built on May 18, 2022, 12:37 a.m.