PCAplot: PCAplot() Function
In jyoh1248/MyoSignature: Myocarditis signature proejct
View source: R/02_signature_plot.R
PCAplot R Documentation
PCAplot() Function
Description
This function generate PCA plots according to batch
Usage
PCAplot(vsd, selected_group = "group", batch, outDIR)
Arguments
vsd
: vsd data (processed with DESeq2 + vst)
selected_group
: groups that is visualised in PCA plots, default = "group"
batch
: batch = NULL if not, check PCA plots with Chip variable
outDIR
: directory to save plots
Value
list
Examples
PCAplot()
jyoh1248/MyoSignature documentation built on May 18, 2022, 12:37 a.m.
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View source: R/02_signature_plot.R
| PCAplot | R Documentation |
PCAplot() Function
Description
This function generate PCA plots according to batch
Usage
PCAplot(vsd, selected_group = "group", batch, outDIR)
Arguments
vsd |
: vsd data (processed with DESeq2 + vst) |
selected_group |
: groups that is visualised in PCA plots, default = "group" |
batch |
: batch = NULL if not, check PCA plots with Chip variable |
outDIR |
: directory to save plots |
Value
list
Examples
PCAplot()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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