get_twisst_data: Import a single topology weighting data set

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

get_twisst_data a single topology weighting data set

Usage

get_twisst_data(loc, w_in, d_in, smooth = FALSE, span = 0.01)

Arguments

loc	sample location (bel [Belize]/ hon [Honduras]/ pan [Panama])
w_in	weights file (topology weighting results)
d_in	data file (window position)
smooth	logical - apply smoothing?
span	granularity of smoothing

Details

The topology weighting file containg the weights is read, normalized and filtered for missing data. Then the file containg the window positions is read, filtered according to the weights file and its columns are renamed.

Optionally, the data is smoothed, then the weights and the position information is merged, reformated and the genomic positions are added.

See Also

Other Figure 4: match_twisst_files()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.