plot_leg: Create topology legend

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

plot_leg creates the elements of the topology highlighting legend.

Usage

plot_leg(
  spec1 = "puella",
  spec2 = "maya",
  color = "#084082ff",
  size = 0.5,
  mode = "pair"
)

Arguments

spec1	string, three letter species identifier
spec2	string, three letter species identifier
color	string, color
size	numeric, line width
mode	string, legend element mode ("pair"/"isolation")

Details

This funtion is used to create the topologie legend of a single a single highlighing scheme. Depending on the highlighting mode (pair/ isolation), the background geometry is created and the hamlet annotations are collected.

Then the geometry is plotted an the hamlets are added.

See Also

Other Figure 5: ax_scl(), cross_spec(), custom_annoplot(), dist_tibble(), distances_tree(), get_clr(), get_dist(), get_gxp_long(), get_isolated_topos(), get_neighbour_topos(), is_isolated(), min_dist(), no_title(), plot_curtain(), plot_fish_zoom(), plot_fst_poptree(), plot_panel_anno(), plot_panel_delta_dxy(), plot_panel_dxy(), plot_panel_fst(), plot_panel_gxp(), plot_panel_twisst(), prep_data(), theme_panels()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.