prep_data: Prepate topology weighting data for zoom plot

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

prep_data imports the twisst data of a selected LG

Usage

prep_data(loc, window_size = twisst_size, ...)

Arguments

loc	sample location (bel [Belize]/ hon [Honduras]/ pan [Panama])
window_size	size of twisst windows (bp)
...	catch-all parameter for purrr::pmap to ignore excessive parameters

Details

Based on the focal outlier names, the linkage group is determined. The topology weighting results and positions files are located and filtered for the focal LG and location.

Then, the selected files are imported.

See Also

Other Figure 5: ax_scl(), cross_spec(), custom_annoplot(), dist_tibble(), distances_tree(), get_clr(), get_dist(), get_gxp_long(), get_isolated_topos(), get_neighbour_topos(), is_isolated(), min_dist(), no_title(), plot_curtain(), plot_fish_zoom(), plot_fst_poptree(), plot_leg(), plot_panel_anno(), plot_panel_delta_dxy(), plot_panel_dxy(), plot_panel_fst(), plot_panel_gxp(), plot_panel_twisst(), theme_panels()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.