experimentType: experimentType R6 class.

In kablag/RDML: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files

experimentType R6 class.

Description

A qPCR experiment. It may contain several runs (runType). Inherits: rdmlBaseType.

Format

An R6Class generator object.

Initialization

experimentType$new(id, description = NULL,
  documentation = NULL, run = NULL)

@section Fields:

id

idType.

description

checkString.

documentation

list of idReferencesType.

run

list of runType.

Methods

AsDataFrame(dp.type = "adp", long.table = FALSE)

Represents amplification (dp.type = "adp") or melting (dp.type = "mdp") data points as data.frame. long.table = TRUE means that fluorescence data for all runs and reacts will be at one collumn.

Super class

RDML::rdmlBaseType -> experimentType

Methods

Public methods

• experimentType$new()

• experimentType$GetFData()

• experimentType$clone()

Inherited methods

• RDML::rdmlBaseType$.asXMLnodes()

• RDML::rdmlBaseType$copy()

• RDML::rdmlBaseType$print()

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Method new()

Usage

experimentType$new(id, description = NULL, documentation = NULL, run = NULL)

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Method GetFData()

Usage

experimentType$GetFData(dp.type = "adp", long.table = FALSE)

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Method clone()

The objects of this class are cloneable with this method.

Usage

experimentType$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

kablag/RDML documentation built on Oct. 20, 2022, 5:47 a.m.