pcrFormatType: pcrFormatType R6 class.

In kablag/RDML: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files

pcrFormatType R6 class.

Description

The display format of the PCR, analogous to the the qPCR instrument run format. Inherits: rdmlBaseType.

Format

An R6Class generator object.

Details

Rotor formats always have 1 column; rows correspond to the number of places in the rotor. Values for common formats are:

Format	rows	columns	rowLabel	columnLabel
single-well	1	1	123	123
48-well plate	6	8	ABC	123
96-well plate	8	12	ABC	123
384-well plate	16	24	ABC	123
1536-well plate	32	48	ABC	123
3072-well array	32	96	A1a1	A1a1
5184-well chip	72	72	ABC	123
32-well rotor	32	1	123	123
72-well rotor	72	1	123	123
100-well rotor	100	1	123	123
free format	-1	1	123	123

If rows field has value -1, the function will not try to reconstruct a plate and just display all run data in a single column. If the columns field has value 1 then the function will not display a column label.

Initialization

pcrFormatType$new(rows, columns, rowLabel, columnLabel)

@section Fields:

rows

checkCount.

columns

checkCount.

rowLabel

labelFormatType.

columnLabel

labelFormatType.

Super class

RDML::rdmlBaseType -> pcrFormatType

Methods

Public methods

• pcrFormatType$new()

• pcrFormatType$clone()

Inherited methods

• RDML::rdmlBaseType$.asXMLnodes()

• RDML::rdmlBaseType$copy()

• RDML::rdmlBaseType$print()

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Method new()

Usage

pcrFormatType$new(rows, columns, rowLabel, columnLabel)

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Method clone()

The objects of this class are cloneable with this method.

Usage

pcrFormatType$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

kablag/RDML documentation built on Oct. 20, 2022, 5:47 a.m.